A-B / C-D / E-H / I-M / N-P / Q-X
| Species | Author(s) | Citation |
| Acanthocystis horrida | Boedijn | Boedijn, 1940 |
| Acanthocystis spiculifera | Boedijn | Boedijn, 1940 |
| Acanthocystis testudo | (Berk.) Boedijn | Boedijn, 1940 |
| Aeruginospora singularis | v. Hoehn. | Overeem, 1922 |
| Agaricus bogoriensis | Léveillé | Léveillé, 1844 |
| Agaricus croceopeplus | Berk. & Br. | Boedijn, 1951a |
| Agaricus depressus | Léveillé | Moritzi, 1845-1846 |
| Agaricus sepulchrorum | Zollinger & Moritzi | Zollinger, 1844, 1854; Moritzi, 1845-1846; |
| Agaricus trichialis | Léveillé | Moritzi, 1845-1846; Zollinger, 1854; Overeem, 1922 |
| Agaricus trichophorus | Zippel | Léveillé, 1844 |
| Agaricus vriesii | Léveillé | Léveillé, 1844 |
| Agaricus xerotus | Jungh. | Moritzi, 1845-1846 |
| Agaricus zeylanicus | (Petch) Boedijn | Boedijn, 1940 |
| Amanita angustilamellata | (Hoehnel) Boedijn | Boedijn, 1951b |
| Amanita hemibapha | Berk. & Br. | Boedijn, 1951b; Corner & Bas, 1962 |
| Amanita hemibapha ssp. javanica | Corner & Bas | Corner & Bas, 1962 |
| Amanita neglecta | Boedijn | Boedijn, 1951b |
| Amanita ovalispora | Boedijn | Boedijn, 1951b |
| Amanita pallidocarnea | (Hoehnel) Boedijn | Boedijn, 1951b |
| Amanita similis | Boedijn | Boedijn, 1951b |
| Amanita tjibodensis | Boedijn | Boedijn, 1951b |
| Amanita volvata | Peck | Boedijn, 1951b |
| Amanitopsis vaginata | (Bull.) Fr. | Overeem, 1922 |
| Amanitopsis vaginata v. angustilamellata | v. Hoehn. | Overeem, 1922 |
| Amanitopsis vaginata v. grisea | DC | Overeem, 1922 |
| Amanitopsis vaginata v. pallidocarnea | v. Hoehn. | Overeem, 1922 |
| Androsaceus crinisequi | (Kalchbr.) Overeem | Overeem, 1927 |
| Armillaria mellea | (Vahl) | Overeem, 1922 |
| Armillaria mellea var. javanica | Hennings | Hennings, 1900; Overeem, 1922 |
| Armillaria termitigena | Berk. | Overeem, 1927 |
| Arrhenia cupuliformis | Hennings | Overeem, 1922 |
| Astrosporina angustifolia | Corner & Horak | Horak, 1979b |
| Astrosporina petchii | (Boedijn) Horak | Boedijn, 1951a; Horak, 1979b, 1983 |
| Astrosporina titibuensis | Kobayasi | Horak, 1979b |
| Bolbitius tjibodensis | Hennings | Hennings, 1900; Overeem, 1922 |
| Boletellus emodensis | (Berk.) Singer | Boedijn, 1960 |
| Boletellus obscurecoccineus | (v. Hoehn.) Singer | Boedijn, 1960; Horak, 1976a, 1983 |
| Boletus arcuatus | Zollinger | Moritzi, 1845-1846; Zollinger, 1854; Corner, 1972 |
| Boletus bovinus | (L.) Fr. | Overeem, 1927 |
| Boletus coccineinanus | Corner | Corner, 1974 |
| Boletus dictyotus | (Boedijn) Corner | Boedijn, 1960; Corner, 1972 |
| Boletus frondosus | Schaeffer | Moritzi, 1845-1846 |
| Boletus junghuhnii | v. Hoehn. | Overeem, 1922 |
| Boletus luridus | Schaeffer | Overeem, 1922 |
| Boletus mugatorius | Corner | Corner, 1974 |
| Boletus oscurecoccineus | v. Hoehn. | Overeem, 1922 |
| Boletus portentosus | B. & Br. | Boedijn, 1940; Corner, 1972 |
| Boletus setigerus | Corner | Corner, 1974 |
| Boletus subtomentosus | (L.) Fr. | Overeem, 1927 |
| Boletus tjibodensis | Henn. | Hennings, 1900; Overeem, 1922; Corner, 1972 |